Assessing sex assignment concordance with genotype and phenotype
- Deepa Suresh†1,
- Jessica Crawford†2,
- Marni E Axelrad†1,
- Sheila K Gunn†1,
- Laurence McCullough†1,
- O’Brian Smith†1,
- Vernon R Sutton†1,
- David Roth†3,
- Lefkothea P Karaviti†1 and
- Jennifer E Dietrich†2Email author
© Suresh et al.; licensee BioMed Central Ltd. 2013
Received: 5 November 2012
Accepted: 8 March 2013
Published: 14 March 2013
To catalogue patients with DSD and to assess the concordance of genotype and phenotype with sex assignment at birth compared to sex assignment before and following assessment by a Gender Medicine Team (GMT) at one institution, as an initial step in formulating standardized guidelines for management of these conditions.
After obtaining IRB approval, a retrospective chart review was conducted patients seen in the Gender Medicine Clinic (GMC) between 2006–2009 at Texas Children’s Hospital (TCH), Houston, Texas. McNemar’s test and Kappa agreement provided associations of various factors with sex assignment at birth prior to GMT assessment and after GMT assessment.
Forty-seven patients seen in the GMC with confirmed DSD.
Forty-seven patients met the inclusion criteria. The mean age of the patients at the time of GMT evaluation was 9.1+/−6.1 years; 61.7% had male karyotype, and 38.3% had female karyotype; 51.1% had a male external phenotype, 42.6% had a female external phenotype, and 6.4% had phenotypic ambiguity. Sex assignment was concordant with genotype and phenotype in 63.8% and 86.4%, respectively of cases at the time of birth and in 76.6% and 97.7%, respectively, of cases after assessment by GMT.
Long-term outcomes are needed to establish standardized practice guidelines for decision-making.
Each year, approximately 1 in 3,000 infants is born with a disorder of sexual differentiation (DSD). One of the many challenges, and often a stressful one, particularly for parents, is determining the sex assignment [1–4]. Because of the paucity of studies on outcomes and decision-making criteria that lead to satisfactory sex assignment, practice guidelines for sex assignment have not yet been established. Several clinical guidelines by our group  and others  have been suggested. However, no previous studies have explored the concordance of gender assignment to genotype and/or phenotype as part of establishing standardized guidelines. Our study goal was to retrospectively assess patients with DSD in order to assess the correlation of genotype and phenotype with sex assignment both before and after assessment by our Gender Medicine Team (GMT).
Diagnostic features of cohort
Age range (years)
N = 47 (%)
Concordance of genotype with sex assignment
Concordanceof karyotype with sex assignment after GMT assessment
Concordance of karyotype with sex assignment at birth
Concordance of phenotype with sex assignment
Concordanceof phenotype with sex assignment after GMT assessment
Concordance of phenotype with sex assignment at birth
Factors assessed in determination of sex assignment
Factors assessed at birth
Male sex assignment (%)
Female sex assignment (%)
Kappa agreement with factor
Factors assessed during GMT evaluation
Male sex assignment (%)
Female sex assignment (%)
Kappa agreement with factor
Managing patients with DSD involves complex medical and surgical challenges, as well as psychological and social uncertainties that cannot always be anticipated at the time of birth. This issue is not unique to this era of medical care, as earlier literature suggested that gender identity involved genetics, endocrinology, neurosurgery, psychology, and anthropology . It has also been suggested that environmental agents (phytoestrogens) may plays a role in gender identity, in addition to genetic and hormonal influence . Over the course of many decades, the management of patients with DSD has evolved to include a well-defined multidisciplinary team in the complex decision-making process of sex assignment [4, 5]. An important component of our GMT assessment at TCH is the education and engagement of the parents in the decision-making process. We were one of the first teams to include parental education and involvement , which was a significant departure from the old paternalistic approach whereby the physician made the sex-assignment. The results of this study provide important data for taking the next step in establishing standardized management criteria. Our results suggest that our approach yields more satisfactory results than does the historical approach.
In spite of this and other advancements, the specific management is not clearly defined for each individual diagnosis, and the challenge of establishing guidelines for making decisions regarding sex assignment remains, partly due to the paucity of outcomes data in this population. Redefining the nomenclature used to refer to these patients in the context of their genetic diagnosis  has provided some clarity and was a step in the direction of standardization. Additionally, the benefits of a comprehensive evaluation that includes hormone, imaging, cytogenetic, and molecular studies are well documented, as is the recognition that a team approach is preferred. Finally, some patients may also benefit from diagnostic laparoscopy and gonadal biopsy to aid in the final sex determination when warranted. This series of interventions, as well as parental involvement, is critical toward establishing a standardized course of action that will eventually lead to a successful outcome for each patient.
The objective of this retrospective chart review was to compare the concordance of sex assignment as male or female with genotype or phenotype based on the initial presentation prior to GMT assessment and concordance following GMT assessment. Our chart review of existing patients demonstrates conclusively that sex assignment does not correlate exactly with phenotypic or genotypic features alone. The findings reported in this retrospective analysis are important preliminary steps toward ongoing studies to establish standardized management criteria.
Decisions regarding sex of rearing in infants born with ambiguous genitalia are challenging, yet critical toward optimizing outcomes for these patients. To date, no data are available to establish guidelines regarding sex assignment, limiting the ability of a multidisciplinary team to diagnose and treat complex conditions effectively. The preliminary results of this study indicate that a greater correlation exists between phenotype and final sex assignment, which is important information for formulating standardized practice guidelines and decision-making algorithms in sex assignment among patients born with DSD. The limitations of our study include the retrospective design and small numbers lending to some interpretation bias. In addition, there were a variety of patients with DSD, therefore, the power within groups was limited. We plan to conduct further studies to ascertain the predictability of outcomes on the basis of sex assignment and underlying conditions. This patient population would benefit greatly from studies to assess patient satisfaction and the risks and benefits of specific gender assignments.
We are grateful to Dr Lee Ligon for her editorial contributions and to our patients who provided us with the content of the paper.
- MacLaughlin DT, Donahoe PK: Sex determination and differentiation. N Engl J Med. 2004, 350 (4): 367-378. 10.1056/NEJMra022784.View ArticlePubMedGoogle Scholar
- Sultan C, Paris F, Jeandel C: Ambiguous genitalia in the newborn: diagnosis, etiology and sex assignment. Endocr Dev. 2004, 7: 23-38.View ArticlePubMedGoogle Scholar
- Hughes IA: Disorders of sex development: a new definition and classification. Best Pract Res Clin Endocrinol Metab. 2008, 22 (1): 119-134. 10.1016/j.beem.2007.11.001.View ArticlePubMedGoogle Scholar
- Axelrad ME, Berg JS, Coker LA: The gender medicine team: “it takes a village”. Adv Pediatr Infect Dis. 2009, 56: 145-164.Google Scholar
- Lee PA, Houk CP, Ahmed FS: Consensus statement on management of intersex disorders. Pediatrics. 2006, 118: 3488Google Scholar
- Douglas G, Axelrad ME, Brandt ML, Crabtree E, Dietrich JE, French S, Gunn S, Karaviti L, Lopez ME, Macias CG, McCullough LB, Suresh D, Sutton VR: Consensus in guidelines for evaluation of DSD by Texas Children’s hospital multidisciplinary gender medicine team. Int J Pediatr Endocrinol. 2010, Epub 2010 Oct 17Google Scholar
- Arcari AJ, Bergada I, Rey RA: Predictive value of anatomical findings and karyotype analysis in the diagnosis of patients with disorders of sexual development. Sex Dev. 2007, 1 (4): 222-9. 10.1159/000104772.View ArticlePubMedGoogle Scholar
- Lu XY, Phung MT, Shaw CA: Genomic imbalances in neonates with birth defects: high detection rates by using chromosomal microarray analysis. Pediatrics. 2008, 122 (6): 1310-8. 10.1542/peds.2008-0297.PubMed CentralView ArticlePubMedGoogle Scholar
- Mendonca BB, Domenice S, Arnhold IJ: 46, XY disorders of sex development (DSD). Clin Endocrinol (Oxf). 2009, 70 (2): 173-87.Google Scholar
- Money J, Ehrhardt A: Man and woman, boy and girl: differentiation and dimorphism of gender identity from conception to maturity. 1972, Johns Hopkins U. PressGoogle Scholar
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